PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00012906-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 241aa    MW: 26622.4 Da    PI: 7.9219
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00012906-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-141562146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqk 46
                      +g+WT++Ed++l + ++ +G g+W t a+  g   gRt++++k +w+ 
  PSME_00012906-RA 15 KGPWTEDEDLRLTQFIRAHGEGRWPTLAKNAGriPGRTDNEIKKYWNR 62
                      79********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-171068IPR009057Homeodomain-like
SuperFamilySSF466899.33E-141069IPR009057Homeodomain-like
PROSITE profilePS5129419.811068IPR017930Myb domain
SMARTSM007179.2E-131466IPR001005SANT/Myb domain
PfamPF002493.0E-121562IPR001005SANT/Myb domain
CDDcd001675.17E-121764No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRKPCYNAK EGINKGPWTE DEDLRLTQFI RAHGEGRWPT LAKNAGRIPG RTDNEIKKYW  60
NRRLNKKVHG NACIDQLKSV GPTEPNVKEP AVSTTPTLIA NQLGERNEVI AYCVKEELKK  120
GSTSSSCNVS GNKLPGKTLI SSMKQNPSSC NLDAGTVLTK MKLWNPVQLN LTISSSWASS  180
NFLLMDAADS IVDKRPDGYT EENVPPQSHC CMFDSVNVIC EGCIDEMYSL PFPEVIPPVP  240
I
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.12e-15myb domain protein 74